Flagstaff
*-Historic Brewing(fav)<-- I will be brewing there for a special event in April(no I'm not a brewer)
*-Mother Road(fav)
-Wanderlust(great beer)
-Dark Sky(saisons, farmhouse, belgians, some sours)
-Beaver Street(typical brew pub with solid typical beers)
-Lumberyard(typical brew pub with solid typical beers)
If you find yourself in the Verde Valley or Cottonwood aread
*-Verde Valley Brewing(great beer)
-That Brewery(solid line up of good beer)
On to Prescott area... Others might be able to chime in on some of them as I have only been to a few there.
Prescott
-Prescott Brewing(solid but typical brew pub)
-Granite Mountain Brewing(have not been)
Chino Valley
-Insurgent Brewing(buddy said it was good, brand new)
Prescott Valley
-Lonesome Valley Brewing(have not been)
Phoenix... ok where to begin...
East Valley(Chandler, Gilbert, Scottsdale)
**-Arizona Wilderness Brewing...Must visit, top brewery, great food, unique locally sourced beers
-San Tan Brewing(Solid line up but widely distributed)
-Huss Brewing(great beer)
*-The Perch Brewery(great unique beers)
*-Beer Research Institute(great beer)
*-12West(great beer)
-Four Peaks(good beer, the one that started it all here, just sold to inbev two years ago but their beer has not changed)
-Sleepy Dog(solid beer)
-OHSO(great beer)
-Papago Brewing(great beer and my old watering hole)
-McFate(great beer, meh food)
*-Goldwater Brewing(awesome beer)
-Scottsdale Beer Co(great beer)
Central(Phoenix)
*-North Mountain(great beer)
-SunUp(good beer)
-Helton(have not been)
-Helio Basin(have not been but a "best new brewery in US" 2016)
*-Wren House(awesome beer)
*-Mother Bunch(great beer and food)
-Phoenix Ale Brewery
West Side(Glendale, Peioria, Avondale, Goodyear)
*-8-Bit Aleworks(Great beer)
-Saddle Mountain Brewing(have not been)
-State 48 Brewery(have not been)
-Dubina(have not been)
-Freak'N Brewing(have not been)
-Oggi's(based out of San Diego, good beer, San Diego Style)
There are a few I have missed, hopefully someone can chime in on those as well as ones I have not been to.
I am asterisking my favorites.
Cheers!