You're looking for at least .005" clearance and no more than .015" clearance between the top of the bolt and the bottom of the cover. A clearance of .010" is ideal. Use a feeler gauge through the ejection port and feel as far fore and aft as it will reach. You can bend one to achieve the proper clearance with a drill press and some wooden blocks.
However, failing to go into battery from a manually cycled isn't usually the major issue with a top cover that's binding. That particular problem more often results in the bolt short stroking and not feeding the next round when the bolt is cycling under recoil.
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A few thoughts on the problem of the round not going into battery on a manual cycle of the bolt.
1) Uzi mags are one of the few that can be loaded beyond capacity, particularly with a magazine loader. The last round loaded should be on the left for a 32 round magazine and on the right if it's a 25 round magazine. If you've loaded 26 rounds in a 25 round magazine, or 33 rounds in a 32 round magazine, you'll now have the first round very snugly fit in the magazine.
2) If you load it at 24 rounds (25 round mag) or 32 rounds (32 round mag) you'll be starting with the top round on the left, and it'll make life easier. That's because rounds feeding from the right side are usually more prone to hanging up than rounds feeding from the left. Similarly, if you're loading a partially full magazine and the top round is on the right, strip a round off (or add a round) so that the top round is on the left.
3) check the edges of the feed lips and smooth the bottom edge of the feed lip if it is rough, particularly on the right side.
4) a cartridge with a too short OAL will be more likely to hang up on the case mouth when feeding. I generally load 147 gr RNs in my Uzi, and I load my Uzi rounds to a near maximum OAL.