DpARmiami, DON'T TOUCH OR FILE ANYTHING ON THE RIFLE OR UPPER!!!!!
As Sully pointed out, when you look into the lower receiver back shelf, you can see that the back edges of the upper receiver take down lugs are slightly binding on the side voids of the back shelf walls and causing you know to have to put a extra pressure on the upper to get it push down so you can get the two locked together. In a couple of hundred live fires and a few cleanings, the edges of the upper receiver rear take down lug that are binding on the lower receiver shelf walls, will peen inward on there own, and the this will allow the upper receiver to mate all the way down so you can slip the rear take down pin over much easier, while still have the lock up between the upper and lower TIGHT!!!!!
So for right now, you will have to use a little extra pressure pushing the upper down on the lower so you can drive the rear take down pin over and lock into the place, but truth me, in a few hundred rounds and a few cleanings alone the way, the two edges of the lugs back edges that are binding now, will peen inwards, and this problem of having to use extra force to get the upper locked down on the lower will not longer be a problem (but still have a tight lock up between the two).
So in the mean time, a little grease on the back lug edges where they are binding now, some on the rear take down pin and the lug channel, and you are good to go to break the rifle in.
Hence the only time you really want to break out a file and remove metal, is if the bottom of the upper receiver take down lug is too long for say a high shelf receiver, and it binding on the bottom of the back shelf isntead. This is not the case here, and isntead you have what RRA does normally, and that is to make the rear lug wider than normal, so when the upper is locking down on the lower via the rear take down pin, there will be no side to side movement of the upper to lower isntead.
So again, your looking a gifted horse in the mouth, and not realizing it instead. Hence you break out the file now, and in a 1K of rounds and cleanings, will try to be coming up with a way to tighten the fit back up, to remove the side to side movement of the upper to the lower isntead (hence peen'g the back of the lug to get the back side edges tight to the side walls again)..
http://www.ar15.com/forums/t_3_66/282974_Why_won_t_my_new_upper_receiver_lock_close_on_my_new_RRA_lower_receiver_________.html