The can is going to change the POI of the zero, plan and simple, and could be the difference of the spreed (some shot suppressed, and some shot with the can removed).
As for the barrel nut, Plus 35 ft lbs of torque, but do not exceed 80 ft lbs to get the top spine void/barrel nut gas tube channel on a float tube indexed with the upper receiver gas tube channel. Also, with the barrel nut loose now, would be a good idea to pull the barrel and clean both the upper receiver barrel socket, and the barrel extension so they do mate up correctly when you go to reinstall the barrel (don't forget to grease the mating areas between the nut and extension so you don't get false torque readings). If you find that you have to go past 80ftlbs to get the top spine void indexed correctly, don't, but instead back the barrel nut off and start your torque again. It may take a few tighting and loosing, but you will get the barrel nut correctly indexed without going over 80ft lbs of torque on the barrel nut (read going past 80 ftlbs, and you just bending/destroying the upper receiver barrel socket).
As for the scope, should be good, but do go back and recheck the scope mount. Here to, you may need to loosen and tighten the bolts a few times to seat the mount correctly to the rifle and scope.