If, dimensionally, that CH is digging into the upper... any coating will be worthless. Instead of cerakoting the interior, I'd opt for either:
A) get a different CH (easiest/fastest solution). As mentioned, SI and Raptors seem to work well in the M5 uppers. Not sure about GA SNACH, maybe try that one too? Perhaps take it to a gun store and politely ask to try others that may be in rifles on the rack (I'm sure they won't open new packages for you)?
Or...
B) modify your BCM to fit properly (people have claimed you need to file/grind down the nubs and lower handle portion for it to fit (it's simply, dimensionally, too tight to work properly in that upper).
If you coat it, that CH will just eat through the coating just like it did to the hard anodizing.
Just my .02