What if they engraved them after QPQing and put some black stuff in the marks?
My marks are darn close to centered on the gas port, black inside, and do not appear to have anything other than the nitriding to color them. I see what you're saying. It stands to reason that the barrels with centered, blackened engraving were assembled, engraved to match the index pin and gas port, and finally QPQed. At the same time, I've learned over time that "stands to reason" and "is" are two different things.
A little bit of Googling will show that various makers other than Radical have nitrided barrels with gas port centered, black engraving. Other makers have shiny engraving. Some makers' engraving encircles the barrel even. Your assumption that centered, blackened engraving always equals nitrided with the extension on might be flawed. If your assumption is correct, quite a few makers are nitriding after installing the extension. My guess is that your assumption is flawed.
From what I've read, if you nitride with the barrel assembled, it might stay tight or it might not.
At $65, I was taking a flier on this barrel just to see how a dirt cheap barrel compares to a good one. My lesson from the purchase was that whether cutting corners on a barrel makes sense depends on ammo prices. I don't really enjoy shooting rifles if they're shooting over 2.75 moa. A good barrel ($250-300) will put pretty much any ammo within that. If you have to pay an extra $.10-.25 per round or constantly be shopping around for just the right cheap ammo to make your gun fun to shoot, a cheap barrel might be a false economy. Right now, I'm getting ammo the Radical barrel likes for around an extra $.10 per round. At that price it makes sense. If the difference moves up to $.25, the cheap barrel becomes a false economy.