If you run a search for power steering on cars and the hydroboost brakes general motors likes on some stuff you should find a lot of basics in hydraulics.
Basically you opened the system.
You need to get fluid to all areas and the noise is usually the bubbles.
On a power steering system on a vehicle you would spin the wheel back and forth and "lightly" hit the limits of it. We did this with vehicle still in air so no weight on tires and just put the newbuddy in there and told him to work for a bit til it got quieter. Now and then check the resevoir.
So with your system having more toys, you have to work them all.
I would just run searches, especially on tractor by net, and see what you come up with for generic hydraulics.
Not saying any of the above is wrong, it sounds correct. But you might find some pointers or hints or an idea on how long this could take.
If you can figure out flows of the fluid, schematic, I would treat it like bleeding the complete brake system. You start at the shortest one I think and get it bled and then go to the next shortest and so on and so forth.
Bleeding in a varying order can let air get back into one of the other lines, not much but a little is a problem.
We would also go on back and check em again after we got to the last one just because it made sure the air was out and got clean fluid all through the system.
I don't know how the hydraulics on a tractor are run, they might all have their own lines off the valve body or they might not.