Quoted:
OK guys, i have my dot set so you can look through the rear peep and see the red dot on the top tip of the front sight post. when the front sights are not visible such as in a dark room this allowas me to allways know where my sight is. i can pop my head up and just use the dot which appears over the sights at that point. is this set up wrong? if it is wrong, it sure does work real efficiently.
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Good 1x optics will be parallax free. That means that no matter where the dot is in the glass (top, side, center, etc), it is still basically aimed at the same point. To verify this, put the dot in the center of the glass and notice where it lands. If you move your head up, down, left, or right, the dot should still be on target, even though it is no longer in the center of the glass.
To recap the discussion above:
Obviously, you want the red dot to point at the same spot as the iron sights. So if they are zeroed to the same spot, the red dot will always be on the tip of the front sight when you look through the rear sight. The only question, then is whether you want have the irons directly in the center of your field of view through the scope (we're calling this "absolute co-witnessing" in this thread) or in the bottom 1/3 or 1/4 of the glass. The latter arrangement is still co-witnessed, but it gives you a much better field of view through your optic. The dot will still be on target whether you look through the iron sights or the center of the tube; otherwise a dot sight is pretty pointless. (no pun intended [;)])
If you have the irons in the center of glass and you're happy with it, more power to you. I used to do that, but I'm much happier with the irons lower and a better field of view.