By saying that you bought a new home is it a newly built home, or new to you?
If it is a newly built I would be all over the builder to tear into it and make it right.
It looks like even the top of the window frame is wet, along with the side. That seems to me you are looking at a roofing issue as rain would have to be horizontal to hit that high up on the wall under the eave. Water will do funky things in a leak and depending on air movement etc. If you can get into that area of the attic when raining and the leak is present I would do some inspection myself also, take pictures, and hammer the builder or utilize the home warranty if there was one when you bought it.
Don't mess around with roof leaks, it wont heal itself, and you will be looking at a lot of damage down the road.