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You probably need to have "view hidden files" or whatever turned on in your OS or Folder View settings.
Not enough info provided to determine if you might have another partition set up on that thing by some kind of factory installed backup software package.
I built all my external hard drives from bare drives and bare housings so that I didn't get stuck with any factory installed automatic backup software crap I didn't want and didn't need.
This is what I am thinking will just having it checked make everything show up hidden? because it looks as though it is in watermark form instead of bold if that doesn't confuse you more
It will show any hidden or system files that are normally not shown to the typical user, who would maybe try to delete them and hose the whole system. However, there are also Read Only or System attributes on files that make it difficult or impossible to delete them if the files are open and in use by the OS.
First thing to do is enable viewing hidden files to see if you have any visible on that drive, or if the Trashcan for that drive has a lot of deleted crap in it that hasn't been cleared out yet.
Usually a modern OS will set aside a small percentage of a drive when it formats it, in order to store information required to restore damage and fix things. Most OS's today keep a running journal on each drive to store file and directory information so that restoration and repairs can be made after a sudden power failure or system lockup.