First off, the rear sight has a allen head screw that is accessible threw the front hole in the housing to allow you to change the knob settings to zero the rear sight.
Reset the front post to be level with the front sight housing, then try to zero the rifle using the rear sight(raising it). Once you have gotten close, tighten the rear sight knob to 3/8 using the set screw, then fine tune the front post to get you on zero. The front post will allow you to fine tune the elevation, verses the mass moment of POI that the rear has to offer. And, depending on your front sight post, you can file the post down to raise the POI. On some rifles with Service sights, this allow the POI to be moved in less that 1/8", if needed.
Also, until you move your distance out to at least 100 yards, don't start marking you sight for the zero setting. Your short zero will change slightly when the distance is stretched.
And, if you start changing ammo(type/brands),the POI will change too.
P.S. Don't worry about writing novels. The more information that you give, the sooner that we can get to the correct answer.