I think it is time to look past mil-spec. I now think of it as a limitation rather than a bonus...
Anywho, the closest to mil-spec out of the box is probably with the manufacturer who has played the military manufacturing game before... Colt. I say that only because of the great quailty control that Colt utilizes during their production. Colt also uses forged buffer tubes in the "proper" mil spec diameter. You will also find that they MP test barrels, shot peen and MP test bolts, and a bunch of other details like that.
All this is comming from someone who doesn't own a colt product. In fact, I intent to purchase my first colt product soon... a Colt Bolt!
Anyway, I think there are rifle configurations that surpass Colts offerings... they just dont have the same lvl of QC.