Just be 100% certain that you use less than 5 IBU's. Hops kill lactic acid bacteria, pretty much why hops became so popular! Or use the more common method of souring the unboiled and unhopped wort first, let it get to the 36hrs or to the sourness level or PH you want, then boil with as many hops as you want just like a normal beer.
I would just sour an unhopped wort to not worry.
I have even done a mix. Cool wort to 95F, pitch lactic bugs, let it sour, pour out 1 gallon and boil with hops, cool the hopped gallon and add back to fermentor and pitch yeast.
Also you can add hops as soon as the PH/sourness is to whatever level you want. Pre, mid, post ferment.
But hops kill, seriously hampen at the very least, lactic acid bacteria. Less than 5 IBU's is the general rule of thumb. I use zero hops to whatever wort I'm souring to be certain I get the most out of it.