1. Yes, it's ok....BUT....
I would rather suggest that you put the additive in the fuel, run the engine for a short bit to get it inside the system, then run the carbs out of fuel or drain them. This will keep the nasty gas from making all that nice varnish inside your carbs.
I would also suggest making sure you drain all of the water from the vehicle and add a little coolant if you feel it might have a chance of freezing.
Pull the spark plugs out and get some "Fogging oil" and spray it into each cylinder, then re-install the plugs. This will keep the cylinders from rusting inside and the fogging oil will not hamper the spark plugs from firing next spring when you decide to start it back up. (Most rec sport dealers will have the can of fogging oil)
Get yourself a cheap "battery tender" (even the $35.00 model will suffice)(can be bought at batteries plus storees and most general hardware stores) and hook it to the battery and plug it in. Most people whine that their recreational vehicles batteries only last 2 years. This is because they let them sit during the off season and totally deplete. Take care of your battery and it will take care of you. I am on the 6th year of my motorcycle battery.
Hopefully this might help you make sure your toy will be ready to roll next spring.