First off, as others have mentioned, ditch the GI kit. Get a 1-piece rod, ideally a coated one like a Dewey (all I use). A one-time purchase you'll have for many years, and will almost make cleaning enjoyable (a lie). In 15 years I've come to learn that cleaning less often is better. You lessen your chances of things like this, and you gain little, unless you notice a drop in accuracy or reliability. AR-15's take a good amount of fouling for that to occur. Just keep it oiled during each outing. I'm anal with cleanliness in general, but I've gotten much more enjoyment out of my rifles cleaning them every 500-1,000 rds or so.
That being said, your barrel is probably fine, and a good chance that's the gas port. I guess I'm just hear to type out what everyone else already said: Go shoot it, if it shoots like it did yesterday, then carry on.
Oh, and a +1 for the bore guide. Another item that's relatively inexpensive, will last you many years, and will make your life easier.