Sorry to hear that I know it sucks!
I've been threading FAL barrels for 15 years now, and usually when this happens it's because the barrel was threaded without using a lathe and the hand tools used (even if it has a bore guide) thread the barrel out of line i.e. not concentric, if your brake has a tight inside tolerance it wouldn't take much for the bullet to be able to strike the inside of the brake. I always take the barrel off the receiver when I thread a barrel. Unless the receiver will fit through the spindale hole then I just put the whole thing in the lathe. Point is to be totally concentric which is very important when using a suppressor, or a brake with a tight tolerance on the ID, a lathe should be used to cut the threads to make sure they are concentric.
You can take the brake off and shoot a few shots and see where it is hitting without it, but if there are copper marks on the inside of the brake they are from bullet strikes.
It could be your gunsmith didn't thread it off center and it was slightly off prior to you giving it to him because if you had a flashider on it before most likely the ID of it was much larger and it allowed plenty of clearance so you would have no bullet strikes.
Good news is, worst case would be just put a muzzle device with a larger ID on it.