As far as terminating the runs it's easier than you think.
You need a RJ45 crimp tool. Don't pay less than $50. Any money you safe buying a $20 piece of junk isn't worth the aggravation. It just isn't.
Get some RJ45 blanks. Get a bag of 50 or 100 off ebay or online someplace. Don't get ripped off at Lowe's.
Sit down and practice terminating a few until you get the hang of it. It won't take long. Basically you strip the last few inches of OUTER insulation, untwist a bit of the exposed 4 twisted pairs, arrange the colors in the right order
Brown - Brown/White - Green - Blue/White - Blue - Green/White - Orange - Orange/White
lay them out parallel, smooth them out, DON'T strip the insulation, trim the end so they're even, slide into the RJ45 blank, crimp, done.
Here's a decent tutorial with pictures:
http://www.wikihow.com/Crimp-Rj45
A $15 RJ45 cable tester is a reasonable investment too.