With a properly adjusted ejector, the case head impact area for the ejector is less than half of the area of the face of the ejector. Look at the bolt face and imagine that the ejector notch wasn't there...that's the space the ejector has to be in to work properly.
The ejector must ride as high as possible in the bolt channel without dragging. It must ride as close to the center of the bolt as possible without dragging. In both directions, it takes gentle tapping or bending in the appropriate direction to get where you want.
How much clearance do you need? As little as possible. Seriously, you want a few oxygen molecules between the bolt and the top and inside of the ejector. If you're worried that the ejector is dragging on the bolt, use "poor man's Dyechem" (a Magic Marker) to color both surfaces of the ejector, then see if it gets scraped off. If it does, tweak in microns until you don't drag anymore.
Since the ejector is both exposed and relatively flimsy, you also need to be careful when the block is out of the gun and/or when the lower is separated from the upper. If there's a possibility the ejector got bumped, recheck its alignment.